BAITS.VDJ.tl.filter_umi

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BAITS.VDJ.tl.filter_umi#

BAITS.VDJ.tl.filter_umi(df, umi_key, min_umi=1)#

Filter dataframe by minimum UMI count per clone.

Parameters:

  • df (pandas.DataFrame) – Input dataframe.

  • umi_key (str) – Column containing UMI counts.

  • min_umi (int, default=1) – Minimum UMI to retain.

Returns:

Filtered dataframe.

Return type:

pandas.DataFrame

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