Tools

tl.kde_filter(adata_sample, score_name[, ...])	Filter spatial transcriptomics (ST) data using Kernel Density Estimation (KDE).
tl.ClusterAutoK(n_clusters[, max_runs, ...])	Identify the best candidates for the number of clusters.
tl.Cluster([n_clusters, covariance_type, ...])	Cluster cells or spots based on features.
tl.dbscan_cluster(adata_tmp[, eps, ...])	Perform DBSCAN clustering on spatial coordinates in an AnnData object.
tl.batch_process(adata, sample_name[, ...])	Process AnnData objects in batches by sample.