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BAITS
API
st
Graph
BAITS.st.gr.aggregate_neighbors
BAITS.st.gr.get_adj
BAITS.st.gr.spatial_neighbors
BAITS.st.gr._save_data
Tools
BAITS.st.tl.kde_filter
BAITS.st.tl.ClusterAutoK
BAITS.st.tl.Cluster
BAITS.st.tl.dbscan_cluster
BAITS.st.tl.batch_process
Plotting
BAITS.st.pl.clustering_results
BAITS.st.pl.kde_res
BAITS.st.pl.silhouette_scores
VDJ
Tools
BAITS.VDJ.tl.stat_clone
BAITS.VDJ.tl.compute_grouped_index
BAITS.VDJ.tl.aggregate_clone_df
BAITS.VDJ.tl.cluster_group
BAITS.VDJ.tl.process_group_with_neighbor_count
BAITS.VDJ.tl.cluster_bcrs
BAITS.VDJ.tl.shannon_entropy
BAITS.VDJ.tl.normalize_shannon_entropy
BAITS.VDJ.tl.Clonality
BAITS.VDJ.tl.renyi_entropy
BAITS.VDJ.tl.gini_index
BAITS.VDJ.tl.Clonal_family_diversification
BAITS.VDJ.tl.compute_migraIdx
BAITS.VDJ.tl.calculate_clone_niche
BAITS.VDJ.tl.calculate_qc_clones
BAITS.VDJ.tl.calculate_qc_umis
BAITS.VDJ.tl.filter_clones
BAITS.VDJ.tl.filter_clones_spatial
BAITS.VDJ.tl.filter_umi
BAITS.VDJ.tl.filter_umi_spatial
BAITS.VDJ.tl.calculate_cdr3_length
Plotting
BAITS.VDJ.pl._plot_bar
BAITS.VDJ.pl._boxplot
BAITS.VDJ.pl._scatter_plot
BAITS.VDJ.pl._plot_xcr
Tutorials
BAITS.st.module - Identify BLAs
BAITS.st.module - Spatial clustering
BAITS.IR module
BAITS.SR module
.md
.pdf
st
st
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