BAITS.st.tl.batch_process

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BAITS.st.tl.batch_process#

BAITS.st.tl.batch_process(adata, sample_name, score_name=None, processing_func=None, func_kwargs=None, verbose=True)#

Process AnnData objects in batches by sample.

Parameters:

  • adata (AnnData) – The AnnData object to process.

  • sample_name (str) – Column name in obs that identifies samples.

  • score_name (Optional[str] (default: None)) – Optional column name that represent the interested features

  • processing_func (Optional[Callable] (default: None)) – Function to apply to each sample batch.

  • func_kwargs (Optional[dict] (default: None)) – Additional arguments for the processing function.

  • verbose (bool (default: True)) – Whether to print progress information.

Returns:

The concatenated adata from all processed samples.

Return type:

AnnData

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