BAITS.VDJ.tl.filter_umi_spatial

BAITS.VDJ.tl.filter_umi_spatial(df, clone_umi_key, min_umi_spatial=1)

Filter dataframe by minimum spatial UMI count per clone.

Parameters:

• df (pandas.DataFrame) – Input dataframe.

• clone_umi_key (str) – Column containing spatial UMI counts.

• min_umi_spatial (int, default=1) – Minimum spatial UMI to retain.

Returns:

Filtered dataframe.

Return type:

pandas.DataFrame